Answer 1) Skills are learned through weapons and class rank ups I think. There were no skills until Awakening I think, but there are mods for GBA roms that actually add skills to the older games like Rekka no Ken and Sacred Stones. Fun fact right there.
Answer 2) Villagers can promote into pretty much any class in that game, so they all start out as them for versatility. That being said, most of the villagers excel in certain classes, like Kliff as a mage for instance, so people tend to only go with one class with them all anyway. It's the thought that counts I guess?
Answer 3) ... *Shrugs* I dunno.